NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000408

Scaffold Ga0214921_10000408


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81500
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (76.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F006060Metagenome / Metatranscriptome382Y
F049494Metagenome / Metatranscriptome146N
F104750Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000408100F049494N/AMETFLLSLQVAFVFIMWKWSGEAFEQGLNHMGWLYIVASAGNAASVAVALGL
Ga0214921_10000408121F000324AGGAMIKQISPKHTFTYNGATLNVYHANKGQGLPRHQHFYSHATICHSGSCIVRVESKELIMTKNTQPVNLLGNKWHEIEALEDKTVFVNVFAEGKN
Ga0214921_1000040894F006060AGGMLKFEKVAKVGDTIRAYDFKPCAGRDDAFIEGVVEQTNCTEPGFMSYKITVTADKFVKFETKANKKNRVGKIMFVPYQTSFMEFDFRVINLSE
Ga0214921_1000040899F104750AGGAMNTKLQKILADAKIGKAEFDAGSYYVCSEGTLETIIKSVVDACADEARRYTFRSNGISEDYNGTTNVEIEIRKLYESSN
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