NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000556

Scaffold Ga0214921_10000556


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000556 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68887
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (53.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F004256Metagenome446Y
F029410Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000055620F002977N/AMKNQIPAEGIMKTNDWGDSRVYRVPCNCGDETHNHNVWVEADDHDIIVTVYTTGKTNFWSKKRWDHIWTLLTKGYVDTESSVHLTRQQAYNYANTLLSAVDDVEKFRNDRKEKSAAAKLAEEQDCV
Ga0214921_1000055635F029410N/AMDVKIPFNSNWKNIAISVSGGADSALLAYMVCELAKEHNVTVHIINHVRMWKTRPWQQHDADQVYNWLFQRFYHTTFKRHTNFIAPDIEYGNIGPNLTDEYGKQVSGDNIQQRAYAEFICHKHDVDVYYNAVTRNPRLASFNGMRERDIEPTVDNKHLEYMIHMGRVASHPFRFVDKSWVLAQYKRLEIMDLFDITRSCEGEFADINYTNYNKGQYVPVCNECFWCKEREWAIKANEPTQEMLP
Ga0214921_1000055667F004256GGAGGVEKFDYYYNNVPGHGPCRNNLIYTSLINSDKTIFVQWYHNDSEYHKGQNQVVDPNKMEEKWLREVNYLTQMRNAFPELVPKIINIDLKAQKLYLEIDGPDFWEQAGCDMANYDRVLPDWQEQMLEIFKAHKSLGLWKYSMHPSSYFVVNGKLKSINYFFTYNDREKLISIQDVESHIYSARQEEMRRHIEGLGIKWDEPQSFETLNQLCWASFSNNYPQDFIERAKTI
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