NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000610

Scaffold Ga0214921_10000610


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65101
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (82.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F001464Metagenome / Metatranscriptome689Y
F003408Metagenome / Metatranscriptome488Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000061030F001464N/AMVRRQRTPTPKKFLYFFLNDKIHKVLKSSRSRDELIAWCYPDKKRVMYSYSQAVKYMENAFTTAQVGEILGKHKVTIEDYILEGKIRAPHRVYPIGNPDSKWSKYMFNQKDILELHQFILDDGHSSKLPSKTELLAILKHNTILYTKTEDGKFVPVWKAE
Ga0214921_100006104F000376GAGMSIYQEKAKECKCCGKHVPLPTVLKEYNEVLLCPTTFANVIEYTRLWKVLGSRPSGNIRKHFSDYVQQLVETTIDKNKDGTLQ
Ga0214921_1000061042F003408AGAAGMPELIQTLKSIQKVESEKRRFLASIQGVDLGKDGEEQEGPSFEDVQRRALGINASGDDIVSLQGQLASSAGFGIGAGLGYEKG
Ga0214921_1000061045F000258GGAGGMVNYKLDAMLELRKYIWKRLKDTEIFNEDDYYSENIGDITVPIIPVQQVAELNQFLSGKKHIVYDKIGMSYEDLWAICCEQILFTIYSTDVAEINEIRNFMTDEFRRVDESARDVNNWVDLSDKFQFYSIFIADISPTEPSEEMEGFLSADIVLEIKYSRAAGANGRFI
Ga0214921_100006106F000369AGAAGMEIELADHYDRMNKVVEELLKGNNPTTIANLTGFKRAEVVELIDEWKSVVHNDTSSRERAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKANALKLISDIETKRIGMLQQVGLLDNAELAGQIADTERKQDILVKILKEVTSGCPNCKMNVAKRLSQITGIVEAVVIEDADVV
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