Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000656 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000656 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	62429
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	72 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

62429

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

72 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005117	Metagenome	411	Y
F020509	Metagenome	223	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N
F058568	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000065621	F020509	GAG	MSNPVTPFRNNLFGSRGMDIQSALDYSEMMINTLSATDQVAVRTAFGVVINTIDSAVTQSQGPSPVEEALFAIIDKRIAVLQINTQVEINASIDDWMDNNLRDKMMDILANDDIDDQISNWMSNNFDITDYNVDDAIESWMDNNLDDKVTDAARCLTFTVEVSR
Ga0214921_1000065632	F039000	AGGA	MTKKTDAPDKDIEQIMDDAQTLLNFCGNTYVKPADAWFACLVSSAILTAELSVPLEKFLEGFEHAYNDAMKAKNAMKGPTYDH
Ga0214921_1000065633	F031377	GGA	MITNAHEFISASSTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLVVGFLIILTVG
Ga0214921_1000065634	F028744	N/A	MYEFLYECDELGLGLKCFFEYEPAEVGSVEPMSGLKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRNVI
Ga0214921_1000065635	F045551	GAGG	MTEQRELELLRPYVAACGEFVTKNAELEKHLKAIDRLLLEVLMGDIDPMQAMINRQKIKDEYEQP
Ga0214921_1000065666	F058568	AGGA	MPPIRVEKAGEIILKISALSTSFAHRPNIKLITIANTEIHRVVLTMSVTYSVSLSLVSGVGLEGVLGIGFLVIQVCQSRV
Ga0214921_1000065667	F005117	GAG	MKISYDKWYPIVQPQVNVQAEVFAKRVERLDAERALQVQIDQQVKKFHQYEYEIYEYRMRQITVNIDITNLKREIDKLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000656

Overview

Ecosystem & Geography

Associated Families

Sequences