NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000812

Scaffold Ga0214921_10000812


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000812 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55547
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (84.62%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001464Metagenome / Metatranscriptome689Y
F001900Metagenome / Metatranscriptome620Y
F002501Metagenome / Metatranscriptome553Y
F002622Metagenome / Metatranscriptome542Y
F005053Metagenome / Metatranscriptome413Y
F005054Metagenome / Metatranscriptome413Y
F013888Metagenome / Metatranscriptome267Y
F025747Metagenome / Metatranscriptome200Y
F079594Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000081214F005054N/AMAEILINSQSPIFHQIFWNGDIAELAPGAEPVVKIYDVTLDARVSPAVLPTTVLATITSTLDETNPGTYSINVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDPSDPSYKSYKELLRAERYARKQIEQYTGQKFYLYDETLMVYGYEYDTLPLPAKINQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLKIKAEII
Ga0214921_1000081215F001229GAGMNSIVDSVLSMNLDVYRQSEIQDPDTGAIVKEWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQIRTSEKLTIREKVTNIRDVENNTIWNEINYPNETPTVFEVMGTTPITDPFGRVIAYNSSLKRSENQQIGQ
Ga0214921_1000081216F001900GGAMLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVISKLTTNKSFQNAFGKMMFDQIDSDFGNYIDALARSKPKSLHHVYEWKKSGNKTARLFKLNKTAQIGLSFGVNYEFLPSKSMVPASSGRRRHVFANKASIMEQGKPLVIRPKNAERLVFQIDEETIFMPKGASVTIKRPGGSAARNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALRVPSNIKKVQYSFSANTIRSQADSALTLSFGGAM
Ga0214921_1000081217F000258GGGGGVTANYKLDAMLELRKYLWKELYTRNIFDENDYWSENLNENIIPIIPVQQAPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDSSAQDINKWVGLSNKFKFHSVYIADISPTAPSEELQGFFSSEIILEIKYSRITDDVGRFL
Ga0214921_1000081222F005053AGGAGGMPVVFLPRGSILYIEAKDLLASPAGTVKIWNKVTEHNRSALELGTERIEKIVRTSNGTLRKNHIADKRQFQLSWEMLPAYRTLTVDGGWGAEDLRTFYFGDEGKQSFNIRVNLAKTGSDQSSAGYESYTVIISSCNFTVVKRGLQPHFNVSLTLDEV
Ga0214921_1000081226F079594AGGMITRFGKRFLTNYLAGNADFGQKELAFGIGSTAASADNTRLNFEFYRVPVTIGSIDITNTGTEQSPVYVYKAVYQATIPQDVAGVISEIALYPASRTSRNNFDSNFITQFDNNLLWTDSDGFNPLLQLNTSQLVSKIGENMVYVQTPLSTVKEYTTPLGSLDLSGYSVNDSIAIAYKKADNNVSKIRLKFYSSPTQYCFVDFTPEAIGATPDKIQSTTLNNLFSNTSATAPDFKNIIKLGVEVTANSSGTTTVYFDGIRINDEDTFDANYGMISRSVLTGGNIVTKTSGRQVDIEYKLQLGF
Ga0214921_1000081234F002501GGAMMKCEKCSGRVFVDRVFSQKLHTELFCILCGKRWMINKETNAFAKWLEKTDRDYAKNSSISS
Ga0214921_1000081235F001464N/AMARENRQRLRKKFVYFFLNGKVHKVLRLSRAKDEVIAWSYLDKKRVMYSYSQVDKNMEKAYTILEASKILGRHRVTIEEYILQGKIKQPQKVYPISNPDSTWSKYMLSESDILDIHQFIIDAGHIRDLPSRSELQALLKHNLIMYTKTEDGKFVPVWKAE
Ga0214921_1000081245F025747AGGAGVPNLNEFFEKEKIMSPELERFGGKKPCAKCDKDAEEYFWEVATLTMTWTCPDGHKNTYRL
Ga0214921_1000081256F013888GGAMSVVGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGEYNDTVLIGMPDTYILNAPGNIYKPLFKDNTADLVLGIWECGETLKGRVGQVLVSHDKVIDSEDKVDNCDYPDMWGTMLFRKNMIRYIDTALDHPGKQLKEWISRGSNIKAVRPGGQYMDIGTLRGLKQLYKEME
Ga0214921_1000081261F002622GGAMTEEEDQDADRLAYYLEIGAVSLEGMDENGELVYSISEDAETLAPELWQSHTEYVDRSLMELYEQGLVEVEYDENLEATLHITPEGQKIAKEKGLIEMDINRDIPND
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