NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000872

Scaffold Ga0214921_10000872


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000872 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53638
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (83.33%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F002501Metagenome / Metatranscriptome553Y
F004006Metagenome / Metatranscriptome457Y
F009685Metagenome / Metatranscriptome314Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F014144Metagenome / Metatranscriptome265Y
F026561Metagenome / Metatranscriptome197Y
F033433Metagenome / Metatranscriptome177Y
F042904Metagenome / Metatranscriptome157Y
F068743Metagenome / Metatranscriptome124Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100008722F002387GAGGMSDPHGTIGNYRKGGSIMASFLEDVNQMVIDAVISDISEALFDDWMNANLDEGQYYADKRFAEMSGDKFIMDEFNKFYNLKEEDEDYQC
Ga0214921_1000087225F026561GGAMSMDGTGMTPPPNGSASGAVTSQEATRKRPTQGLRSGIKVDTNRHGIRRETSLTPKPPKKTGRKKV
Ga0214921_100008723F001460GAGGMLGYTVDDLDRMINAIHDAKLFYLRSPSDLMDKAPLKKDLEDAVSFMQGLWAEGYFD
Ga0214921_1000087236F042904AGGAGMDKQMTVLESIIEEVATDLYNKWSAAVPENERNDLAFQALSKNAHETTIFVIQNFMNRFNSAADELKDK
Ga0214921_1000087242F000671GAGGMEKILCYSCNKSKNKLNVKKSSLLPINLLMCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNEIAASELLI
Ga0214921_1000087243F074876N/AVKEYYEIINVVYIHDLRVYGTIEKMGTYASVVKYTKDGIDYKEMIENDEFAIVDEIVFEHAEEEK
Ga0214921_1000087244F000473AGGAGMASSMFDNKHFKYGINQFTGEPNKPVFYSQAMAKKIKEIKAPVMGLQMDIAKYPDFLAIKLYEDNFIQYQGTQKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL
Ga0214921_1000087246F012975AGGAVLNLTLKGVEVFIERSKNKNQDSYWDNYDLMIWKKDHNGFTNIKGLFRKDTWGIAERISVSDEGIWKLPTKYVKHFK
Ga0214921_1000087249F014140N/AMNTYKVKLSVEVEVEAFNEADARDYVGDIFNIDDEIKHVNIVKILEK
Ga0214921_100008725F000263AGGMNAEDIGLPPHLQRMVNAGCTGLDIMHGELKNLMLIAEQELTHAQEVEDETEEAIDSMERKYWEGVLDTYGQLYKLTYDLSFAIDEKEKQNV
Ga0214921_1000087257F068743N/AMPWKVKQGAAGCKGFAVVKETGELVGCHPSKSRAVAHMRALYASEADNKKIKKSILKGE
Ga0214921_100008726F033433AGGAGMYNPSLEILEVNYSVSPGGVDEFEVYSLDERDSFDPPIFSTTSLHEAVQYCYDLGRDFVVRTFAEWEARELA
Ga0214921_1000087262F000376GGAMSLYQEKAKECKCCGKHVPLPTVLKEYNGTMLCPTTFANVIEYKRIWKASGSRPMGNIRKHFSEYVQQIVEETIDKNEDGTLQ
Ga0214921_1000087264F000369AGAAGMTELEPAIHYDRMNKVVEELLKGNSPTQIATLTGFTRKEVIEFIDEWKSVIHNDTSLRDRAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIEAKRIGMLQSVGVLENNEIASQIAEAERKQEVLVKILKEVTSTCPKCKMDVAKRLSQITGVVEAIVVEDASGS
Ga0214921_1000087279F004006AGGAMTEDIEGLVTSISMNQILVAILEEHKKITVPTLRFLDANTNNKELVIDYDETIPSFTFSLREQNGNESSSN
Ga0214921_100008728F009685GAGGMKMSDQYVDSVLAEAQRLLWGGSETENIQAHNLISKLIRDRMQDSEPGAE
Ga0214921_1000087286F014144AGGMEGGIVEKGRVVICDICKKGIEVRWGIFANDTLSRHKKAEHK
Ga0214921_1000087288F002501AGGMWCRKCGGRVFVDRVFSQKLHVEVFCILCGKRSMINKETSAFGKWLENKETINSKNYGIS
Ga0214921_100008729F000852AGGAMTTKREYLKQQGITVGARGRFSGAAKTALQEAVNKGVVFTPEKPAQKAK
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