NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000984

Scaffold Ga0214921_10000984


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000984 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49976
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (71.00%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F004092Metagenome / Metatranscriptome453Y
F004475Metagenome / Metatranscriptome436Y
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F011077Metagenome / Metatranscriptome295Y
F017788Metagenome / Metatranscriptome238Y
F018928Metagenome / Metatranscriptome232Y
F019320Metagenome / Metatranscriptome230N
F019826Metagenome / Metatranscriptome227N
F020851Metagenome / Metatranscriptome221Y
F028423Metagenome / Metatranscriptome191Y
F032149Metagenome180Y
F034550Metagenome / Metatranscriptome174N
F034566Metagenome174Y
F054581Metagenome139Y
F084233Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000098418F034550AGGAGMKKLKEWGMAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLVSVAIWFATIGIRKED
Ga0214921_100009843F004092AGGMLEQKFTVYPGKWPCKTCEEIVTSLRYWKETGDATWMCTQKHISKVGLIPQKKKKRDYLK
Ga0214921_1000098441F028423AGTAGGMENLEKNELIQLVGFYKQKLSDVELELLKLQLEVNKLNSMVLSLSQEPVKKTK
Ga0214921_1000098442F006885N/AMEYLLVIGLTLLSYWSIIKISNKKRMAFLNKNKYRQSSIYEMVKDIVPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAINGRVDEETIQPLDIENMSTKELDKMLSILDDLKQGVGPNDSSSTGNKGI
Ga0214921_1000098444F018928AGGAGMIIRSLNTMEKIINKNKNLLWNGWDVIDLKESDVAKTSPMGIRIKDKWYLHRIYKPGRNGWDIPNKYKD
Ga0214921_1000098452F032149GGAGMKKKIIILILSAISIFIAINLFFASRLSQLSDLDLFDIEEEE
Ga0214921_1000098454F010599GAGMEMMFLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKTRALEELNSQIDNGISMSDDTIHKENFIKFLSDSRDWAFEYIERSQQTIKEVSDELRVKGLNNYSEKLLALLPEMGQEKR
Ga0214921_1000098467F004475GAGGMTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSKGFLKSRRTQRAFEASAAIARGQNEQIDG
Ga0214921_1000098469F017788AGGAMKKIIITFLLISLLIPTTSAQAATKSLNTKANKVSCKNIKTKYESDVMSKWSNGLASDQDVLKEIDLNIAMLTAKQKSTTGKIKTTIASWITAEKNTKIALMDKNVKLITDAMNLKISSITNFDKLCKSIEK
Ga0214921_1000098472F020851AGGMENLVQLAITMTEIDTGTELPLKERELMKQRILTKLEDINK
Ga0214921_1000098473F034566AGGMSIKIKTIIWVQTTLILILGLSMLFIGGDLKQTRKMTLDQSNFCIKYTSDIIASSRLDLIKEQDAHVRTVDKANSVIDDIINRYNLLVARYNKSTGGTNYDPLNTYSYRIRP
Ga0214921_1000098474F054581AGGAMCPHCNTPLIPILYGYANPKYLDMHKQGLIFLVSTTYHTKHDPTSYCKKCEESFDIKL
Ga0214921_1000098475F011077GGAMDTNLTWAEEEVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAY
Ga0214921_1000098477F019826N/AMGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDQLDRGVYNGRR
Ga0214921_1000098482F019320GAGMHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSESAYENSSDMIISYAEKPDEFKKTIEDIKRYRINYMNDKLIKLDNAFDNLKSDVVDYISNDCKLDDKRQFDFSRWEIKEAIDMLNSHWTCDSAFFDHNEFTSSLHYLEERLDKPEEAALHYLVPVDFHF
Ga0214921_1000098485F084233AGGAMTLNVEIYEMDYSCSPGGVNCWEVSTDDELCTTGFATAGEALQHVLDKYPNHELNLNVKSLNWYFKEFADEYAV
Ga0214921_1000098494F003393GAGGMIDLENDDTIQIVEYVKVDMLTSGQLEIDDNILIADEVVSIVDIVSLPDGYTLEIVNDFGEREIIQVGEYDQFDLMMLQ
Ga0214921_1000098496F000808AGGAGMEYTYSLTTSYDGELINTLRVSDMLEAVRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
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