Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10001655 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37446
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (69.23%)
Novel Protein Genes	23 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Associated Families	23

Taxonomy
Not Available	(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F014488	Metagenome	262	Y
F023059	Metagenome	211	Y
F023585	Metagenome	209	Y
F026543	Metagenome	197	N
F027777	Metagenome / Metatranscriptome	193	N
F030060	Metagenome	186	N
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F074559	Metagenome	119	N
F093492	Metagenome	106	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000165511	F100669	GAGG	MTKGICDLRKILHKAQVRLTQAGSLIIGYLRKAGSLVRSINDLGNFYFAKTPQNRFRPRLFCTN
Ga0214921_1000165512	F007164	AGGA	MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLEAIQDIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSITQWTPAQRTQFVEEARPIVEAFKEAGGEL
Ga0214921_1000165514	F014488	GGA	MNHIGQDPADSILASYTPDMAEHIDTLQDRVKERLAKMQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNSEAWAKGIKPRGKKR
Ga0214921_1000165518	F010463	GGA	VSVNDLVLAATIHRVKSCEDKIAQFEQLISTLTAQMAHNRTELASKGLANLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRGIK
Ga0214921_1000165521	F023585	AGGAG	MSVKRLSLVDEFHGLVSRRLKDLFKRLNHAEVENFKDIISHLDYSHRITKELLERAKKYQKRDAEKNK
Ga0214921_1000165523	F033350	AGGAGG	MSAVDVEVPETKWSMLVWKTIKEKPYNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214921_1000165526	F027777	AGGA	MSEELPAFWHQEPANKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRFLNLPKTQKENAEGFGVFDDGQNKK
Ga0214921_1000165528	F005702	GGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNHPKEPKQPELVLPSKNWVGRN
Ga0214921_1000165529	F005846	N/A	MTSFPLPARPQASAVPAWHIEFKKETAIEGKLNGWRGWFDQETGQGYNRHGNFASNHNLMAERIIGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKSLDDGKYPYITNPSYCSPAWQKQRIRW
Ga0214921_1000165531	F074559	N/A	MKAQNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKTFKILSTKHPHK
Ga0214921_1000165533	F011284	AGCAG	MTSAQSVEKTEEKIFTKKHDLHLTTLQMAAVESMEKKYKKGVVENCGTKLWEMPTARLVEEAIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL
Ga0214921_1000165535	F023059	GGA	MWEAILASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDSEVDSWIHRR
Ga0214921_1000165536	F012113	N/A	MNQLLSFVQSQDLFAWLGALTALLTAAIAICALIPGDEPEATLTKIVSFLSKFSRK
Ga0214921_1000165540	F035669	AGG	MRENTLTELQGISILTKSFFNKLIRRIESTKPVAGPGITIIEEDNGFKIGIGGTGSGSFQEVTLNVCSNGEPATIKVFAQAQN
Ga0214921_1000165541	F093492	N/A	MASVIIGSAIGATSTSKVLQRQNFNKEPNGLETLIESYAIQTANRDTIVPQKDTLHSAFSSSTKKYSRMVVESVATEEQDGGITQMLVTFVGLTTASGLPPPIVRLIPTPGAGIYGPPLVVEAEFITDINESQFIQGNINATASIKLGNISFGQVNQMPAFINGTKMPSNPRTPAKSQQGFSLLEYFGYCTESHACERRGLFLVARTTYKEFEAGFNFASFQ
Ga0214921_1000165545	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGTEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0214921_1000165546	F006138	GAGG	MAAVTIGTSNLTFATVSEGSIGLVQSFSEARNIEKNEVRNNAGDIVAVGYYNATTSYSLSVALIGAYNVTAGAALAALNNATTAVGNGSLRIDSITINKSNDAFVTLDISATGYPNVS
Ga0214921_1000165551	F009142	N/A	MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTATKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIKTAKRAWQRGLKMSLICTPSELDDGLRFLDFSEQRNSMYVAVI
Ga0214921_1000165553	F005584	AGGAG	MAGSIPTSYFATDLNYMIQDLYQSVTGLGSSSVSASVTDLSTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214921_1000165554	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYNDVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDEPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFYVLCPADIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFEGLVSMD
Ga0214921_1000165556	F030060	N/A	MTKGIITSESPEIHWEHLNVAGGRLLDLGCAFWTESERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAPQMNTWITENSITHIKCDIEGDETQLLQIENVHNLKEIAIELHYSDTWLKEFMAWFDSIGFECYRHDSVSFCPEISVIYGRLKC
Ga0214921_1000165558	F003049	AGGA	MKNAKQIIGCRKSKKGEDTKGLGMIRFGKSRPDPTKYVKVNITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK
Ga0214921_100016559	F008938	GGA	MRQSELAKLWGISGAAINKLVKAGMPLTSEAEAQSWKIANQKRVGRKQLLIQAPSPTSSEQLKESDAESYKSTSSLGRLNRAKQAEVVAYSLVATAATNKNPVAMRSAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10001655

Overview

Ecosystem & Geography

Associated Families

Sequences