NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001674

Scaffold Ga0214921_10001674


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37258
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (67.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027106Metagenome / Metatranscriptome195Y
F032925Metagenome / Metatranscriptome178Y
F041589Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000167422F032925N/AMVLNEGNFMTTKLKDFRSPPWETSLFKGIPMDKYTPEKIRVIREIVGRPLKIRFRGPRNTAADNGRTSHTRQSSCLKVNAKTFTVYCR
Ga0214921_1000167428F027106GGAGMKYWTELNNLESQIIRLETMRSLFSVMASGAEESSPDDIRNALWYVEGSLNDIHANLRSEFNELWEVVCNDDTKELVEKVKDKHKGGMKKKKQMTDRELP
Ga0214921_100016747F041589AGGAGVSYSRWSFSVWYSFWNGSSSGKQKDDQVLSLWYSLDKTIDWTYADLEDITAQDIQRRYNCELEDAEEGMTYVNRFIKDVNEEFESVK
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