NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001972

Scaffold Ga0214921_10001972


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34338
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (71.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022410Metagenome / Metatranscriptome214Y
F045091Metagenome153N
F078376Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000197211F022410AGGAGMKYTVEWHDKMHRWDVVRWDITAEGARVGTTVDRCATIEDAQEICAYHMDMMNPDLWAEVGCEFDQETA
Ga0214921_1000197219F045091N/AMLNKLVLTQELITRYPDAPGLDEAMRSWWQNIRDDGGLRLTYEGYRVFSDCLELNSYTFELPEKLLTPRNLIALDRHMASPYYIVNNRKHNHMVMFGSREAMMATLHGDMQRFIKSLSY
Ga0214921_1000197239F078376AGGAGMPKKKAKIELYAEAPYIQGFDSAKAGEEFYNPYAEIENSEADAEDYARGYENAVEEQAQ
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