NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10001990

Scaffold Ga0214921_10001990


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001990 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34173
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (88.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018681Metagenome / Metatranscriptome233Y
F018682Metagenome / Metatranscriptome233Y
F028428Metagenome / Metatranscriptome191N
F085340Metagenome111Y
F088161Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000199023F018681AGGAMDPQLEQALIATQEFMQQYGIDARTMASIGQMAEQAIQDPSLYAMLREQLIGAGILDEEDLPEQTNYMALAALVAMGALAGGM
Ga0214921_1000199030F018682AGGAGMKSRPQQRDHNLNQQVASPFRPQLPQEGSPHMVRWEPGQLPKGGFRSIIPFCEGAYDTKQSPTSGAGKRIY
Ga0214921_1000199039F028428GAGGMSYGKNEYPVTPGKATLFYKDPSQKKNPNQPDWDGDLVLTRSYTEGQTLKLSIWKSMARNGKEYFTVKENTYFKDKEVADNAPKEVPASYKPYGGTFKKPVDDDSDVPF
Ga0214921_1000199043F088161AGGMKLCIHCKHLLPRDGDPDFTLAKCAAFFNIHPVSGRKMYSYAFNQRMFLVNTGEGKCGESAVFWEPKEEINDE
Ga0214921_1000199047F085340GGAGMTDYQMMQYWRAVKTPNREVEQKALEFGHAVYFQAYKTARDELKHSFYSGMARGHEDCKPALQKALSALDSAYYMLKIQPVTPEQEADTIAIAIQSVTETLEKLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.