NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002018

Scaffold Ga0214921_10002018


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33790
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F055425Metagenome / Metatranscriptome138N
F093759Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000201819F093759GGAGMFKVTFHYYSKLLKRDFYNVEIHRSMDDARLRGCTLNWTISSVENI
Ga0214921_1000201826F019099AGGAGVIVKGKIVKDWDKSQISTAYQRPNQFKVITWDMGRIQSWLLGQKPLARNLIEKVI
Ga0214921_1000201841F055425AGGMITDQEKQAGLVMNSFHREMEIYGYQLNIDNYAAMLEALPAGEWPEDLEAFRTIKTEDLPHDLSDDQVAQIGDFQYRDRLRVLVRTEKAEQNKSIRIRDVLKAQIGSNYDALVAAYKISQ
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