NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002813

Scaffold Ga0214921_10002813


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27533
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F017265Metagenome / Metatranscriptome241N
F041188Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000281316F017265AGGVIARTSTTSFTKQMNNIINYSFGFLEGVDRGKKIFFDRLGKGAIQALAQYIDVQARANPKALHHVYEWNQVSSPSARLFNLGYTVSNLGLSVNSTFKQSRSVSENMTTPFYNKAKIMEEGIPVTITPTKSKVLKFNGPNGEIFTSRPIKVENPGGDSVVGGFESTFDEFMTRYFKQSFLRASGIYDYIKKPTLYKKNFKAGSVAGRSKGIDTGFKWITNATIGVE
Ga0214921_1000281317F004405GGAGMDSCEVTDFMFPMKADIYFPILAQGGYGQPTKDWVYDRTITCNATSVGGLGSEDVKPDNFLKYENKLIARTKEDPRLSSNNANNATTNILITNIRDASDTIIYKETAGARSGKGTIYEVATVEPFTGPFGYTEYYKMLWRRAENQTVGD
Ga0214921_1000281319F041188GGAGMNLTMDQLKDKTVMALKAYAKKNNIELFESNTKLEILEILASWIPPEITEETAEKAGKNKNLTNKIALHSDRNLHMDGLGALSVGYNIVSKEASEKWLTHRLVRIAQPEEVASYYAKV
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Institute for Fundamental Biomedical Research
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