NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10003105

Scaffold Ga0214921_10003105


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003105 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25990
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017603Metagenome / Metatranscriptome239Y
F034079Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000310513F034079N/AMASINPSSGQGALFELVARGVKDNYFVKDSRDSTFVYDARYDSSAHHVSERKTVVPINDTKFGNTFEVEINPYGDVMTECAFEIDLPVWYPSLPRSAGDLQLCDPHIINGLYPITAAGGGQSYGYVNYVGYFLFEKIQVYQDQFLIQEWSGDGLLAKELSEGSYNSAFLQQTVAGFVEDVANPVRGIQLRATPGHLRVKIPLPGMQCPGDGGLPLVAMAWQTFRIKATLRRLEDLVVCDDPTVHQPNLTPWNVPLFTYMGEDGAPVTFAPKPLADIGQPTILLSTIQHYVPPRVQQELRSSVIQIPFRRQFENNFTFGELDYIPLDKGGTAAVTQWIDGRFPTERFFWFFRTQNALDRNRLDDFFNDYFDTHVPTATQPLTVPYGAFYYTMKLVIAGRDRENLHEPLVWQQLCVLAKDERANGKGIGEMKWNTGEAYGVVYPAPRQPEGTINMSTAYRPTLYMELANINANPLIAQRRSEFRVFTEGWATYEVKEGRGRLLFAN
Ga0214921_100031052F017603AGGMSQLETPSPYVGDYPFETVEGNLFTPVCLRTHWDPTQMLTHILPQQKVGLPEDFRPWVKVCKQYVTSGPTIPAPMPPKDMVFPTGGEFYPPGRYSANIDKESVLRTLNRPLDKWCPTTKYIPRQNSNLFVAGSTVPDRKPVSDAFVSELAMPKALLRTDVYTCRSENDTKYFDRSPRLFNNPTKQDRYGRAKFYSLPGVNSPADRGQPMPHGGVNQVPPTRQAIVASWPIEQPGGALPIYSPGQPTERALRTTNLHTGDTSFAGITTAGSAAHVW
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