NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004198

Scaffold Ga0214921_10004198


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21399
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (42.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F039478Metagenome / Metatranscriptome163Y
F050171Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000419812F039478N/AMNWVKILNFIDGIFPEEQVELTLGALYKIKGEELPFRYIRFANDSYSNKPVYRFKHHQLKEYKFNDLSKIERQANKEEVRLYNLIKEHVNEVAENND
Ga0214921_1000419829F017268N/AVNLDITIIFNLVLGALSFLGGWLFTRVFSLFDKQETLMKDINDKTFSDFITLRKEMELEGRKHQQEIADLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHFNRKN
Ga0214921_100041985F050171AGTAGMGMFNYIKVEQDLPLNDELKALNIDFKKEEFQTKELEESLMSTYVIRDYRLFELKITSHWEDNPDYVKDNSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSGQRIEAQESFMKEIEDHDRKMRCPVYSFYFKYYVKTMNLIEWKVSIGIVKIINLLNWLQWKGIRKVIRILTPR
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Institute for Fundamental Biomedical Research
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