NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004447

Scaffold Ga0214921_10004447


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004447 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20623
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (27.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050364Metagenome / Metatranscriptome145Y
F086587Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000444728F086587N/AMENNTFEKYRYAIYHKPTQKWVHFVRDDIELTVTNIELVDFKNCLKSPTKGILEKFLRRSTFNKTPNYVNENFLEFEITKIKIKTTYTIEL
Ga0214921_1000444735F050364AGGAMIPKKYATYRNTKVGDKIRFRESTMHWFTNRIENAKKLVSGQVYTVKKISVASSSTGVILEETNEEVELTWFDVIEDL

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