NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004873

Scaffold Ga0214921_10004873


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19384
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F003408Metagenome / Metatranscriptome488Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000487311F001229N/AMKMDVYRQFDSQNPDTGAIVKEWQYYKTVDCHAKGVVSNSATTRSSDKQIFDNKYTNDQIIQVRTAERITAREKVTNIRDMDGNVIWVEINFPTETPTVFEVMGTTPLTDPFGRVLAYNSAMKRSENQRIGQ
Ga0214921_1000487312F001900GGAGLDNSKLLVQASSGLERLMVGQSTGPLKDSNVAQISAYVYYTAQVISKLTTSKSFQNKFSKTLFDQIQADFGAYIDAQARVKPKSLHHVYEWKRTGDMNARLFKLNKLSQDGLSFRLDYELLPSRSLVPTSKGKHRHVFANKASVMEAGMPVVIAPRAAERLVFESNGITVFMPKGASVTVRRPGGAGARNQFGLAYSIFFSGQLVSNSIKKSGFQKIFNSGMTKALKLPANIKTVQYKFSPNSIKLQADANLAAAFGGAL
Ga0214921_1000487313F000258GGAGGMTVNYNLDAMLELRKFLWEELKSAGLFEETDYYSDNVGLEIVPIIPVQQAAEFNQFLSGKTHIVYDKIGMSYEDMWAICCEQVLFTVYSTDVSEINALRNFMVDQFRRMDESARDVNKWSGLSDKFKFHSIFVADISPTSPSEELQGFFSADVILEIKYSRMADVNGRFI
Ga0214921_1000487316F003408AGAAGGLFLLGHWRNYEELEEQLSMPELINTFKAIQKKEQEKRKFLASLQGIDLDGEEKEKSEGLTFDDIKARALGIGASANDVVSLQGSFAAEAGFGIGAGLGYSRE
Ga0214921_100048739F001106AGGAGMSFETLKVAELKKIAEDFAVDAEGLKSKSDIIAALAEEGVTWAVYNKTLKDVEESEDISDEVIAKFDPKADLAEDTVLVRMTRENFRYDIMGHTFTKEHPFVAMKEKQAQEIFDKEEGFRLATPKEVQEYYG
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