 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10005619 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17625 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (87.18%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004231 | Metagenome | 447 | Y |
| F014489 | Metagenome | 262 | N |
| F015570 | Metagenome | 253 | Y |
| F019101 | Metagenome | 231 | N |
| F020664 | Metagenome | 222 | Y |
| F032957 | Metagenome | 178 | Y |
| F079808 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000561912 | F020664 | AGG | MQGHLFKLTESERHIIKTIGKGNYAEGVRICIMWGAHFYNLGLNIEMDLKHIGLVTVSSTDQHPNE |
| Ga0214921_1000561919 | F014489 | AGGAG | MEMKQQHYAILKRLHHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVSKERVAAGTTTETYDGADLKQSGIREGAFDFMKYPSKFGDNLTYPRKYV |
| Ga0214921_1000561920 | F004231 | AGGAG | MSVKPKDFQHEICVYLEGIGECLVCFDILTPNDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKAMEEMLEITTQWHKEWEECFD |
| Ga0214921_1000561922 | F015570 | AGG | MNDKLDQAFDELEFDVTDQIRNSAYLAEQRKVATGVTDGTAQRNLVRDLTENLRTLQPSTDYNILRNDVIEEVAVELAKLPFGDTAASYAAFVRQMKR |
| Ga0214921_1000561924 | F079808 | GGAGG | MKMKDELQDIYEDQQDVYYCCYCLEPQGEKVTCCFENHFVEFKYLFPNDQQEIAQEILNG |
| Ga0214921_1000561925 | F032957 | AGGAG | MDNFIPTTRMFPRSLREAYPKDYVNENLIEGPFYSAPNIHDLPVLFALIAVLSMIAVAIWRYF |
| Ga0214921_1000561936 | F019101 | AGG | MLHEGRMELEGAKKTIEGVMADVKAIKGIWDWIVGLFSPKTKSKSEDAPKPLAKAKAASKKQQSYEEMELQTINEVGVQLGNFFDIQAKLNDYYASLEAESKEHYDPNQNTSKKAIERALVELQMENLDAQIREQMTVYAPPELKAIYTRFLKMYAKIQQEQEWARDEEIRKARRARWAKEQREIDFIYFVSGLVGVAFISLVMGWIMWQVKTMTQSSLLLG |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |