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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10006904 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15309 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (51.85%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F009734 | Metagenome / Metatranscriptome | 313 | Y |
| F030376 | Metagenome / Metatranscriptome | 185 | N |
| F039994 | Metagenome | 162 | N |
| F057984 | Metagenome / Metatranscriptome | 135 | N |
| F091592 | Metagenome | 107 | N |
| F096882 | Metagenome / Metatranscriptome | 104 | N |
| F098923 | Metagenome | 103 | N |
| F102824 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000690410 | F091592 | GGA | MISAQFTRGDEDDRIKQLAGEVAIRAMRDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLSRVIKKGLKNVN |
| Ga0214921_1000690411 | F102824 | N/A | MTPVRVQREEGKWRVTTMAGNPIGPRLWGTVPPNGLPSIEDLFDDKAKAQDAADLWNAYAMWCQERSGKRKRR |
| Ga0214921_1000690415 | F039994 | AGGA | MDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWQQLKKGLPRL |
| Ga0214921_1000690419 | F096882 | N/A | MLGYGCGLVLDIQAKQMQIKKQEMPHKNRFIMAHNQRSLKESVKAWRTFEDALKNLDSFEQCAKWVIDHPEVCKKLSGMGLLAVMKEDLKKEA |
| Ga0214921_1000690420 | F030376 | N/A | MAVLVAPVMAEDDDADSADFVGAVLKQNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDEAFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQKEDND |
| Ga0214921_1000690426 | F002149 | GGAG | MWPNLTEWFGWFEKQGMVGIVRDEDGIAGVALARCIKDGQTPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLAKRFGPRKRITFNRSGKPRSYDYMNFMRKAMA |
| Ga0214921_1000690427 | F009734 | N/A | IQSINPAKINISTAIFYDNRYFMSFPTGSNDYNDTILVYNTALNAFEGIWTPQVMQFALTNFESQGLRATFKTTTGNINQYFGYKSPSELTSADYLDAGQNYESSVRTKDFNFGDTFALKYGSHFEVIFDDSYSTDTSISIQRDIDVGDIDVQPNLNISSAALTLPFTLPASLPTSVKKRIASDLRKYEKWRLLNVKISSVAGKMAVRQIAAAANPDTIEVQKSL |
| Ga0214921_100069045 | F098923 | N/A | MYYEEINRKHVKALEEILKTERCVPGKLMSDDSGPLAYIMNQMLYDKFHGHGWELDLLTGRFVRTTGE |
| Ga0214921_100069049 | F057984 | GGA | MRDNSIHDCVPGRLSILACGKDYKVGGLGKIQILAERKVQMVELDIEVDEETKSKICHAALREITSDGDALFSYGFNQALRRFIQTKGKKCTKKSSNKKRSRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |