NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006989

Scaffold Ga0214921_10006989


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006989 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15208
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F029104Metagenome189Y
F073560Metagenome120N
F105191Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000698910F073560AGGAMLVCDVSAIDKLLDLYFENLSVIYNDKKFLLYDLRDEFVDNNIQCSIYDHEITTSGIYFKDKLIVAIDKQQDFRKDDTINL
Ga0214921_1000698911F005589N/AMAKFKHSFWRYVPSTEKFKSEFKFVESFETDSDAVPEFHDHYCIDHMINLETGQMRVKNHSAPEYCVSKYIGWGLELPPVEKTNKQEIYMVIHRSSFSHKKIEFDEFLEPKDNHYSQEDWDFLLSVLEQRFTKQKEWAKDGIKIPSQYDDGTQVFKTENEFRAFSFGRRAYFLYHLVRNYGFTHLVRRFNIGYTG
Ga0214921_1000698915F105191AGGAMKKILLTVVALFATTSVFAADPIFGSKPPVKKSGVDFTTQSVGVQMQDNKFFVNYANDGKDWFTITNPGKTIPNVENYAGGLLKGTRFVSVVATNGKETRVSYGFEKQLVKFDVPVIGTNATVMGQVFPTGFGGGSFSNLNLSNNWSWGVRVGFDVSKLKLPKLF
Ga0214921_100069899F029104N/AMKTSFKEFLEKIDYKDPSEYDFDADETIDKNIKETIKNINKSSWCWTLWSCEGHIHSKDEKSLPYFVFIVKKKCIPVLLGMLFDTLDPKINVKTMLPLCNTNSINISWGFTDDKYAIVNVHWYDNFLDDPVAHKKLLSDFYEMSFKILEAKL
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