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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10007013 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15164 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (62.86%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F004132 | Metagenome / Metatranscriptome | 451 | Y |
| F005348 | Metagenome / Metatranscriptome | 403 | Y |
| F006844 | Metagenome / Metatranscriptome | 363 | Y |
| F007112 | Metagenome | 357 | Y |
| F014849 | Metagenome / Metatranscriptome | 259 | Y |
| F019324 | Metagenome / Metatranscriptome | 230 | Y |
| F034566 | Metagenome | 174 | Y |
| F044490 | Metagenome | 154 | N |
| F054581 | Metagenome | 139 | Y |
| F084217 | Metagenome / Metatranscriptome | 112 | N |
| F084233 | Metagenome / Metatranscriptome | 112 | Y |
| F100416 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000701318 | F004132 | GAG | MTQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEEQIAEWYDPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLNSYEYDADLTVDEVSLEDHY |
| Ga0214921_100070132 | F084217 | AGG | MSDYLNYLDEVYDDLVAEYGEGITLAYHEANIKEM |
| Ga0214921_1000701321 | F084233 | AGGA | MTLNVEIYEMDYSCSPGGINCWEVSINDWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFADEYAV |
| Ga0214921_1000701323 | F019324 | GGA | MLGYERDDLDNMVIAVESALTTVNSDDDPWLHRNLTQASDFLQGLWAEGYFD |
| Ga0214921_1000701325 | F007112 | GGA | VHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVLGYDKDKDKFQETLVCIGKWKSQVMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDIMMSAYTMKETATMLMGGWTPDSGLYDLAENIAEATYLKERLDKPEQAVRQYLVPVDFHF |
| Ga0214921_1000701326 | F006844 | AGGAG | MAKWEIEVIFEPTGDYMNFVYETDTEDEDIIFNEVANQLSIVPNLVEKNEEE |
| Ga0214921_1000701328 | F044490 | N/A | MMRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGFYVAKSLPHTIYRRALEVLQSAEFQENEVEQNKLGYRNDRLY |
| Ga0214921_1000701332 | F054581 | AGGA | MCPHCNVKLIPILYGFVDPKYVDMHKEGLVFLVSTTYHTKNSPTSYCKKCEDSFDIKVSL |
| Ga0214921_1000701333 | F034566 | AGG | MRFKLKGIIWGQSALIVILLLSLLFVGGDLKQARKMTLDQSNYCIKYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLSIYSYRIRP |
| Ga0214921_100070134 | F005348 | N/A | MINTLMRFECDECNGVGLIFWGNDLDYDVEKCECENFALGTLFTTKEND |
| Ga0214921_100070136 | F014849 | N/A | MEGVKQMITNLDLIAIIIALSGSMLVMFLFYKQNVAQQKEIRRLRNELRKAFKV |
| Ga0214921_100070137 | F100416 | AGAAGG | MGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPYAISADELMDWKLN |
| Ga0214921_100070139 | F000808 | AGGAG | MEYTYSLTTSYDGELIHTLRVSDMLEAIRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYADGNVVIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |