NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007041

Scaffold Ga0214921_10007041


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007041 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15128
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025754Metagenome / Metatranscriptome200Y
F048758Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000704114F048758AGGAGMLPEYQPVDRKPNIMAVRNPLKQTVSRIVPLAQRVVQLQNYKDWQRLVAEYQRQGIKIDPKLRPIVKMVKLKHLFIDEDIQRALDPKHCTKISTIGIFNPMYLQVLYCVKIPGQEEYHSVDAQHTATLVAALISAGIFEGESNWQEVEMPVLYIETESKAFARKAFALINGKGKKKISPWYEHRTKVMSVRIDGSKDTDDIVSERKQSICERYHCYAVDKESSFVGMPGTFTHMAALNLDEKILEVACKFHNDYFHYDEIDGSLWFMIEDLYKGFAAAKMTLSDDFLAELAGIIQGYFAGLKQFHAAVHRAHRLWGLGNYGYEVPWQDDAIAAVLVSFYKKLGGTQRIPQPMLDRFADILNFADDDIKDFCQSSTAEFA
Ga0214921_1000704115F025754GAGMYFYILPGPYRLGFGITSDPIRRTKDYTGAWGGPAVFAYLFEGPSPHIKRLEDIIKTMHRDMLWKIDDWETEWLDNGWTAEQLRDFVLELIQERHLAIKLSS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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