NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008084

Scaffold Ga0214921_10008084


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008084 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13784
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F002099Metagenome / Metatranscriptome593Y
F035219Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000808414F000166AGGMSNIPTPHDAAYFAQSVRKWQQVLNLGDWRIEKGLKPAKNAMASVEFNDGARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLITAAQDQKSSVELLEKEEHRVINLLEKLLSKDSYGIK
Ga0214921_1000808422F035219AGGTGGMSKGGTTTSTSSIDPQIKEAFLANFQQAQGVAGALPVQQFAGYNPMYQAGEEALVNTGLAGPGISGTDLAAQMAAYGGVYQPGQITAQQTNLGLGQGPGTIGSYMNPYTSMVRENALSDLESARRAAIQQT
Ga0214921_100080849F002099N/AVRWLIALVLTLALQSTGKDLCSVREFYAIAYTIHNPSYRHEQMSIWLTNHQHLCKSTDLVVIWNNLAEWAGTADSAELRHKVIIAYKNALEREKK
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