NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008249

Scaffold Ga0214921_10008249


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13589
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F040522Metagenome161N
F078383Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000824910F078383GGAMKTKGGARPGSGRKPTQISESRALKLWKDGVSKKEIAKRFGVAYQAILYFFKKHKIFNRGKLKNQAPQKPH
Ga0214921_1000824916F040522N/AMANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTATPVAAKAKKAEAEIWDEGRVVAELAANLSQFFKVQQQLADHIREEEEKSKSVYDPNQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGVACLVFVLYLVLFFSLLIMDRKVRWGF
Ga0214921_100082495F002764AGGAMKEPEDEAFEDLAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAKELDKFAGAFGRDTVQSFAAYVRGMKR
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