NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008437

Scaffold Ga0214921_10008437


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008437 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13355
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F010449Metagenome / Metatranscriptome303N
F012569Metagenome / Metatranscriptome279N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000843710F012569AGGAMSRALDKFQGQYGFSVGSTGTATAGYWAIQMLTDTTFSAISGRYDGTLTGVTIGSGNIIYGEFNSYTAGTGTVIGYIAG
Ga0214921_1000843713F010449GGGGGMSEEQVWNMEIRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRFSN
Ga0214921_1000843716F000635AGAAGMTLTEIAQYAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVSYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQSALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214921_1000843718F002149AGAAGGMTAVEYIEQSGVPEAMWPNLADWFGWFEKQGMVGIVRDNDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLGCLLLLLAERFGPRKRITFNRSGKPRSYDYMSFMRKALR
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