NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008846

Scaffold Ga0214921_10008846


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008846 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12905
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F001414Metagenome / Metatranscriptome699Y
F002135Metagenome / Metatranscriptome590Y
F015995Metagenome250Y
F019825Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000884613F002135N/AMANTRKRKKVNRRVVRKSPDPLSKLEVFYIAKHEMYKAARKAGFSEPLALALMDSPSSMPDWVVGEDGIIPSIPTPDEDDD
Ga0214921_1000884619F019825AGGGGGMGYVEIYRGGPYLERMENDQVKFIPSNDLCIACNDDRLIHSGNYLICTQCQCRQ
Ga0214921_1000884620F000141AGGAMYPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGIKNIAEALHIPDSDICRCSKCGGWKFLTVDCHTCHLIGAK
Ga0214921_100088464F001414N/AMIYTIASLSVETGIAPQEFMDMDTDMYTAIIQVLTDRAKEIKNASRGRRR
Ga0214921_100088465F015995AGGAGMPVEVVGVKDVLAGLEFIDEDMRQRIRTAIDPLMRGVAFKAKGFVKANENVLSGWAKASGNPGTFPKYDSNVVRAGIGYNPGENKTFRNGFKVSNYVYNASRPGAIYEVAGRLNPQGRAPFQMTPSQGASGTYTKKSTRSRALQQYNSNNPFASQQFVAALEPVTTQPKIKDIRGGGRKTKGRLIYKAWAQDSTKVYDAILKAINATAIDFNKKTEIRKAA
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