NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10009223

Scaffold Ga0214921_10009223


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10009223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12541
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F007467Metagenome / Metatranscriptome350Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N
F041081Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000922314F002009N/AMEEMTPPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNDETSVDHLERALVRTLFVLAQIKKEVPRL
Ga0214921_1000922315F041081GAGGMMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCYAKVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214921_1000922316F003304N/AMKQALVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0214921_100092234F025460AGGAGMAVIDIPELVNMFRQGDIDKQAAAEAQRRQALEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTIRNEQDLQNQDIETQRAELSDRLKELQKKRVKQEIEIAKGDTRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYKNKLAELGFNRQAGQMETNIPDYQSPTMPLQAPTQVVPETPAQTPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ
Ga0214921_100092237F030376N/AMAMLVASGMADEDDTDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND
Ga0214921_100092239F007467N/AVNDKEAWDQFEDGLQDAKSYDEAIAWVKANQEIVEKLTLRAMINKFNRDISNANKTWRN
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