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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10011400 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10810 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (79.41%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F002071 | Metagenome / Metatranscriptome | 596 | Y |
| F002489 | Metagenome / Metatranscriptome | 554 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F003663 | Metagenome / Metatranscriptome | 474 | Y |
| F005531 | Metagenome / Metatranscriptome | 397 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F007470 | Metagenome / Metatranscriptome | 350 | Y |
| F038205 | Metagenome / Metatranscriptome | 166 | Y |
| F085262 | Metagenome / Metatranscriptome | 111 | Y |
| F105172 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1001140010 | F105172 | GGAGG | MTLELNDYGLEFDTYVCYIALSWQILIPATIALIAYKIYKRKKNK |
| Ga0214921_1001140013 | F000447 | GGAG | MGYIEIFRINEEGAGWVDLSEATPDEMFQIEIGLLNEGAFE |
| Ga0214921_1001140014 | F006744 | AGGAG | MNLEEFKKHVIAQREASKAEALSVLSATITPTTERKEN |
| Ga0214921_1001140015 | F038205 | AGGA | MGNLAEIIAVACDECGGAGFLFWGDENNYDVEACECAVEDWNI |
| Ga0214921_1001140020 | F003663 | AGGTGG | MLSTAIELLQATKDSVFDDEIMGLAGELHTRRNELSDEIFAKYLFMYSSAVASKVADSVTRVLLTEQEMSDLCDTIEEMDNLSETILEENE |
| Ga0214921_1001140022 | F085262 | AGGAGG | MDNLYSILSTWYPEGDYTEAELWDAIAESEGLDVSEIMDGDLTEYL |
| Ga0214921_1001140023 | F002071 | AGGA | MEIGQTYTTTQSGITGIIKAVDNHPSGVNRILLDVNGEERWTSATAN |
| Ga0214921_1001140028 | F003422 | N/A | MTNELISSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIQPTQTKEEQMETDTTVSPAVNYNPDLLVTYKVLHGYSDPEYATDKVRNIEWDLHNARQNSKTVSTLQSNINTVKDIITEAYTDSDDQETLRAIAEALGIELIKEVQFTASVEVTGTYSYNILDSDYEPDLTDEVTDALYADSNNGNITIDDTEVCNVREAY |
| Ga0214921_1001140029 | F000311 | GAGG | MYFELTAPDRLSMEMAYWDAQITGLDPQAMTPLTFNIGTGSIEKVSRLRDKFNLIESYTSDYEPTGYTGR |
| Ga0214921_100114003 | F002489 | AGGA | MTEENMEPAPLDQNLPMVNYIMMHRIYDLLTLIANKLVGPEDVSKMVSYHDQGFLLGPQPSYTPSPEVEEEFVQDLIDFEQ |
| Ga0214921_1001140030 | F007470 | GGAG | MDYQDGFEDGVKFAREVIIANIKLWAEDNEDGQVYDEIADRIEFGTVDYDL |
| Ga0214921_1001140032 | F000450 | AGGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHNMLGRLADAVIAARPRWTDSSYATRIAISQLVADQWNMETGWGLHVNEIGDNEHKIAIIDWDQQIFSLHEQADYRDETNKVRGMKNEAIFTMDLSSFCEKYALENILVN |
| Ga0214921_100114008 | F005531 | AGAAG | MTITYSLWQGSQLLSVNNKASKPEEILAVMEELNKLGKGFSFIVREVEVNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |