NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10011575

Scaffold Ga0214921_10011575


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10011575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10694
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001157511F028084N/AMKKLILVLPLFLLVSCSEHNPDSRELPTKYPETPTMGSADDITKELYKK
Ga0214921_100115755F009669N/AMKTMLSKIFGPNWRSSSSGITTVVAVCTAIAIHSDPSLVTFLPDQAETYIVGMSKLIAVVSGIIFALTVKDANVTGGTIASTTEAQERIHPHGDNI
Ga0214921_100115756F014229GGAGMNKLNLIAIAFLTLLLGACATTPTGQVDAAASVENALPYVKPAVVLACTVVLDQAISGDDRVEKAKMINHVAAIVEGLTVGTAPTPDQLQKALTDYLPEQKTHWVNYVTVIKDIYAQQFARIDGNTALAIKVLNAIASGCKDATASYVE
Ga0214921_100115758F010817N/ALKKFASVLVLNFLLVSCVTVTPNKIEDDKSSYDATTPKQYDKDNGGLICFVGDDALITNQARERYNNLITMYRIKFKKEKAIDLKEDSGVKPYKDNFGNNLYLIDTEHLVYFGVLNSWLKEKVPQDNILDKTIDKINN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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