NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10011626

Scaffold Ga0214921_10011626


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10011626 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10660
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (41.67%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F024040Metagenome / Metatranscriptome207Y
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F039497Metagenome / Metatranscriptome163N
F044916Metagenome / Metatranscriptome153Y
F048123Metagenome / Metatranscriptome148Y
F049419Metagenome / Metatranscriptome146Y
F062447Metagenome / Metatranscriptome130N
F078229Metagenome / Metatranscriptome116Y
F082149Metagenome / Metatranscriptome113N
F096610Metagenome / Metatranscriptome104N
F104482Metagenome / Metatranscriptome100N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100116261F082149N/AHIDWCIGRWFGRNNNLEIRVTLPTISLGYKKEDDDKWFGFKFNLRTDISFESYEYGKIFSLIILGFGVKVSKFIL
Ga0214921_1001162610F032536N/AMSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIPYKADQKNLELKEDSTGYVEGYIDKEINKPISLDSSEYEYVLDEIIFALQMVVDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0214921_1001162612F104482N/AMKKIKKWKKEVTSEEFEKEMKAQGRLVSKVYYRITFKGMGLYILNSFKFKLFPKFFYMNSKYFTECGFNWLGWIFEFQWNR
Ga0214921_1001162614F048123N/AMKPRYDFTKGKMISYDGEIIEFAGSSKIDKYSDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF
Ga0214921_1001162615F034827AGGAGMKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHSIYMKIRIPNFTGANIVDLDDGKAYGFSDKKRNTINDPDEKQGNKVYKLNAKINIVII
Ga0214921_1001162616F078229N/AMNKIKYTYYIEQDKDKDGNLIQSWSVYKSPLVKTIKVKTFKKLKDADTFLDTYESN
Ga0214921_1001162617F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNADFIDAKLLKTFPSPYHARNWMEYDGKRTY
Ga0214921_100116262F039497N/AMNEENNFNSDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKFDLLNAMREIDNEEQ
Ga0214921_1001162621F027756GGAGMKLKDLIDRKILFINFPINRHAIQEGKVSEISPAEKCIKINNDWHLRDNIRIIELFSEKERPALGFN
Ga0214921_1001162622F032548N/AMNYNKEMDKAIKLLEELVTQADEDCPQDCRTMHFVNALEEASEFIMEYKNTK
Ga0214921_1001162623F036564GGAGMKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLTNWIRISEDKNATEDMIPEFLLDKEND
Ga0214921_1001162625F044916N/AMGRKKIEKSRIEKGIEKEEKTFALMSKKIVDAIKDEKFLREFTKQCLEELYKDNPKMFADHAKLKLNKK
Ga0214921_1001162630F049419AGGMKLPKFDYLNLATTYILFGLIYGTIVALVWNYLFESVSSIHLSILQGFGIHLMTRILFGNTNTNYISNFYSPKTPDLDKIDGYLKEIQADLDKEADEVERQYEDLDKKD
Ga0214921_1001162633F096610N/AMANRPKTYFVKLTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTS
Ga0214921_1001162636F016774N/AVPPKKNKIIINKEQLDSLNHWRDQILKMEKSYYSQDLEKQRTCRNMINKYLDEVLDHNKNIKEKPKN
Ga0214921_100116266F104483GGAGMKKKIIDKIDLVIEDIINIQELIDFDTSDSSEYDLDSVVNLLAEIRGKVNNEAEEVEKFDLKDL
Ga0214921_100116268F024040AGAAGMTLKMMKAMETIILHTDMNFFVSGHNWFAKVSLEKDIKKSDRYTEATTRAIESLLDQEEKKGVDLKILDYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKLIKDYEEKCKEEGL
Ga0214921_100116269F062447AGGAMQGGRFMKHKIFWEKNNRIKGIVPKEQIIDKTQTHNFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKEKEGYSFNGGVKSFSLQDIKEVLDSVRETLNK
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