NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10011752

Scaffold Ga0214921_10011752


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10011752 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10584
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F013888Metagenome / Metatranscriptome267Y
F018177Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001175211F000369AGAAGMSEIELSEHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDILVRILKETTSTCPKCKMEVAKRLSQITGVIESVPVEEADVV
Ga0214921_1001175213F013888GGAGMSTIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRISTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGEYNDTVLIGMPDTYILNAPGNIYKPLFKEDTADLVLGIWECSESLKGRVGQVLVSNNKVIESEDKVDNCDYPDMWGTMLFRKNMIRYIDTTLDHPGKQLKEWISKGANIKAVRPGGQYMDIGTLRGLKQLYKEME
Ga0214921_1001175223F018177AGGAGMPDINEFLSKPEKIMAIELQKFDGIKPCSKCDKDSDTYYWDAINMTISWECPDEHKNSYVVG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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