NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10012746

Scaffold Ga0214921_10012746


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10012746 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9988
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021128Metagenome220N
F023326Metagenome210Y
F040160Metagenome162N
F058252Metagenome135N
F095282Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001274610F040160N/AMTTEKVKSLCAAITSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAAGKYKEPTDSTIDPDLDEG
Ga0214921_1001274612F095282N/AMASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYVFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWYVPEHTLNNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLD
Ga0214921_100127466F058252GGAMTTNNTFESRIICEGTEVSESPTKILFGQRFNQCWVRKSDIRVKETLGFLDGEKMIRIVVPEDVANTLELEGILD
Ga0214921_100127467F023326N/AMSRVFSSNKGVRRYGIQFGENMDDLGIELYCYSISRGEYGKNLCNKQNINLSDFKLLSPHEHFLNAVKLQWPTEVSIVNGKYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANKDVTFIGIGNPSAGDNPHTRWAMPKGSSNFDSVSPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRRMQQMMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVGLCRSAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVLFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWARDEVSIDTTPDDDYGSDDNGDW
Ga0214921_100127468F021128AGGMKLKNKNLAPVGGWYWKYEIKRDNLTFPAIVYGSTWNSLMQNIEKDYRSNGIELPINIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAVTDKVLGTQLENKARGCSSCNKRRNALNSLS
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