NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10012824

Scaffold Ga0214921_10012824


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10012824 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9938
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002794Metagenome / Metatranscriptome529Y
F003964Metagenome459Y
F006139Metagenome / Metatranscriptome380Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001282411F006139N/AMDTQIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEEKIDNHVENHQ
Ga0214921_1001282413F001872AGGVATAKANPNARPYTGNSDGASAGPRAGMNEWIKQAIVASNDVVWNNGSWGVRDMRGNPGSLSVHATGRAVDLSYRKSEKHEQANRKGAVSFIDIVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0214921_1001282416F002794GGAGMSEGSAWNQGELTEETRRMVLERTEMVNHSMAIFNLIDEIANVSTNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDSAIKALQAHS
Ga0214921_100128246F003964AGAAGGMPFRSYTERSSTVTSNIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDAKNLVPSKAPLSGMARAYKYRSGFQVLPWSDGYNQKIIAKINTRNIKENSAGDKVNVGTFMIQWQGATGTLYDTTMAGALGKALTARYGPRSRVMWKAYEQRRDDVLREMEQLVRRVMDEANRETT
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