Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10013722 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10013722 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9486
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (45.45%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

9486

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (45.45%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (46.15%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001372217	F032548	N/A	MKHNQEMEKAIKILEELVIQADEDCPHDCRTMHFVNALEEASEFIMEYKNTK
Ga0214921_1001372218	F027756	N/A	MKLKDLIDRKILYLNFPINKYAIQEGKVTEISPAEKCIKINNDWYLISNIRIIELFSEKERPALGFN
Ga0214921_1001372222	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFASPYHARNWMENDGKRIN
Ga0214921_1001372223	F078229	N/A	MSNIKYTYYVEQDKDKNGNYIQSFSVYKTPIVKTIRVKTFNKLSEANNFLEKYESN
Ga0214921_1001372224	F034827	N/A	MKYTITSQDKEALTEFDKLKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTLNDPDGQQGNGVYKLNAKINIVIL
Ga0214921_1001372225	F048123	GGA	MKPRYDFNKAKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDLKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNSSNISKIAERMYNFRPF
Ga0214921_1001372226	F104482	N/A	MKKQKKKMTSEEFEKAMKAQGRLVSKVYYRITFKGMGIYILNSFKFKLFPKFFCMNTKYYIECGVNWLGWILEFQWNK
Ga0214921_1001372228	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNATLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214921_1001372229	F062447	AGGA	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAKGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVRETLNKL
Ga0214921_100137223	F062446	AGG	MSFKPIRVIGFILYCLFWIVIAYFFIGCSNTNYRNIPDGMCEDSQNYSTKYNLMDSPDGSQDPNINAKILTREF
Ga0214921_1001372230	F024040	GAGG	MNFYVTGHNWFAKVDIDTKKIDKSDWYNEACTRAIESVLDQEEKEGVDLKIQDYDDFGLGIILLTWDEKNSKNEDEHRVILTSNVLANAGRWAEYKQVKDYEEQCKGFGL
Ga0214921_100137224	F082109	N/A	MWTPIEIFLLTFLLNHSPMKSERLSVKEVIQNREAQLLVESVGLRNEF
Ga0214921_100137226	F016774	AGTAG	MPPKNNKIIFTQDHLDSLNHWRNEILKMEKSYYSKDPEKERTCRNMINKYLDDVLTHNKNIKEKAKNKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10013722

Overview

Ecosystem & Geography

Associated Families

Sequences