NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10014231

Scaffold Ga0214921_10014231


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10014231 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9240
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045757Metagenome / Metatranscriptome152N
F068842Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100142312F045757AGGAMRNILVVVNLLGFFSGICFGLQSEEKKKEPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKIKIPKFQIWEKNFDDTKYLLEKFLNVQFESDEKKTYYMVKKK
Ga0214921_100142316F068842N/AMWYKLAQTPTFQNLTETTSPSSIQAGASQGFVTDAAGYSAVQKFIKDGVPTQIRDVNTGKMVTLAHGNLTNGQFQIVDQNGQGVTQDQYTQWAQANGFNPGNLLLSCYEGAANSNALKSLTSYRGKLMISTTSTPDQNGNYTVFVSGG
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Institute for Fundamental Biomedical Research
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