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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10014579 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9086 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (86.67%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F002598 | Metagenome / Metatranscriptome | 544 | Y |
| F004051 | Metagenome / Metatranscriptome | 455 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F017134 | Metagenome / Metatranscriptome | 242 | Y |
| F017995 | Metagenome / Metatranscriptome | 237 | Y |
| F019325 | Metagenome / Metatranscriptome | 230 | Y |
| F034472 | Metagenome / Metatranscriptome | 174 | N |
| F076101 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100145791 | F034472 | AGGA | MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETF |
| Ga0214921_1001457910 | F005741 | AGGA | MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFNGKVNAYVFDNLKKKKVTAMFLDESIASKLQTN |
| Ga0214921_1001457912 | F004051 | AGGA | MTIGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETDNGERWTTVLATA |
| Ga0214921_1001457914 | F002245 | AGG | MSNLMKVPHTIVFEAIIDLDKIPANLLPALIALDEKSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN |
| Ga0214921_1001457916 | F017134 | GGA | MEQFTVACLNYEICGAEENFDSIEEYEIYGDDYICAECYDSEEMEFYELTGWADADALASAGHGMDEDY |
| Ga0214921_100145792 | F001125 | AGGCGG | MGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQIVGEDWKAETGWGLSVNRILDNEHKIPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM |
| Ga0214921_1001457920 | F076101 | N/A | MYKITLSYDGNAPHWQKDYENEFDAWKDFFEFVDWGFANEYSTVNIYNSEMKCFTRHFYREERKVVTVK |
| Ga0214921_1001457921 | F017995 | GGA | MAKMKEYIEIIAANCDECGGAGFVFWGNETSYDVEPCDCIADVADELTVDWVNE |
| Ga0214921_1001457922 | F006744 | AGG | MNLEEFKKHVLDQREASKAQALSVLSATITKTNEGENQNG |
| Ga0214921_1001457923 | F000447 | GAG | MGYIEFARINEEGVSWVDLSKATPEELLEIEIGLFQEGAI |
| Ga0214921_1001457924 | F002598 | AGAAGG | MATKLYTIESLLVGKNYRSNSRHFSGEIVSAEPRPEIWYGENTEAFLIEVNAGGLRNKFATIAVKVGE |
| Ga0214921_1001457928 | F019325 | AGGAG | MTQLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKFLFSSKSCNCINCICKEDK |
| Ga0214921_100145796 | F000980 | GGA | VHVSGAWYNSSMTNELVSSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVESATIAPSTQTKEEKMEETTTPAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKRVTTLLSQIDTVKDIITEAYEDSEDKDTLRAIAEALSIDLVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIEINDTEVCHVREA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |