NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10015200

Scaffold Ga0214921_10015200


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10015200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8804
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (42.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010897Metagenome / Metatranscriptome297Y
F022820Metagenome / Metatranscriptome212Y
F025679Metagenome / Metatranscriptome200Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001520016F010897N/AMPDGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRKGYLNVETYSWEEGLIELIAHELRHIYQYKKNKFFHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRRSNFKLNLV
Ga0214921_1001520017F035215AGGAGGMKSSEEIVKEISDRIVEYKALMVEHNNNQSAVDELESAIHELDHLLRWINE
Ga0214921_1001520019F025679AGGMTKTFKIGETALGGTIKVVIPKTLTNIRIDVISTNHITRSSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILKWITSKWQIEIPKNII
Ga0214921_1001520022F032572N/AMTTYKYIADYVSKPTIFCYIVDRVVNNNPYLFGGEYNKKLINKKVWMAKQVFPHCEPTQYTYFKTFKEAKDTLNRWGAKWERV
Ga0214921_100152004F022820N/AMKSENRISKILEKRILQDEDPRTIAQIDKFLNNLEVVFVKWAKAHPNWKESEE
Ga0214921_100152007F007359N/AMKLKKQNLGAHWVIGLEGKPTDIEQFHNRIYNWGGTNGNLKWMSHNFAYFWITMEKLERAMFKYVMSGVSDKLGKKFRGAKGGLKGVVMNRVKNTINNIPVEHFHKTAESQDFYALGTISAEKLDTDS
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