NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10016732

Scaffold Ga0214921_10016732


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10016732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8222
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017301Metagenome / Metatranscriptome241Y
F084135Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100167321F017301AGGAGGMNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAALAPVAIRAINPNDKAFGLLPDAKAVETALKAAKAPAKKKAPVKKAAPKK
Ga0214921_1001673210F084135N/AMHKENNFQSESKRSGDAFEELVYADLVNRGFTSIDRNYSFKSVGCEVDFRAHSNTYTEYVEAKGGAAGEGKRPGAQRTDNVKKAIANGALIKTYNTLYYVVYFSAKPEPESYSDNMIKTALKSKIIDEVRYLESKNNFKQYWLDFDNEF
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