NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10017740

Scaffold Ga0214921_10017740


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10017740 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7870
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015732Metagenome / Metatranscriptome252N
F020690Metagenome / Metatranscriptome222N
F022415Metagenome / Metatranscriptome214Y
F048314Metagenome / Metatranscriptome148Y
F074411Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001774010F015732AGGAMTKVTNLETAVSIVRTSTDKATALADIMNILGVSRSNAFVYHTKASKILFSANNVDEIMGKVSPQYKKVSESVQGTSGTKKAQKLAEIDAFLANAPTAKGNPFASLGA
Ga0214921_1001774012F048314AGGMIDSIEQAAAMLSLGYTEHEIIRIMHIPPSMAEDLIQKAEQWNDQEFVPYTEEEVDDMARYFEE
Ga0214921_1001774022F020690GAGGMINEIKSTDKLVSKGIYMSASAIYTHTKSAKIIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVESKTAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP
Ga0214921_100177406F074411GGAMQTTIKLTEKQVALLLQILDEQISVGNIEASDKALADEVLEILETAENKITSLY
Ga0214921_100177408F022415AGGAGMSKMSNLHMIITDAIACDLNEDFIIDLMVEEGLPREACPEILRVFKQVEAVE
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Institute for Fundamental Biomedical Research
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