NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10018033

Scaffold Ga0214921_10018033


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10018033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7772
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y
F025979Metagenome / Metatranscriptome199Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100180331F025979N/AKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYA
Ga0214921_100180332F058150N/AMEILVNSSSPITHKVFWRGQLTDADALPAVKVFDITEDPAVTPPINPGVALATLTPVKSEVDYGTYTVYIPFDYTNRQRQLRLNWVYNVNGETMYKDHKVFVQTPYTDMSQAVDSLGLGSDYSDPNSKSYLELCNAERYARKLIEAYTGQQFYLYDDVQIVYGSGSDVLPLPYKISELHELYQNDILLLDNLNGVDNWNYTTVISESGFGLRINRATMLDNTIYVANGMVPPTINDTYGGAFYNGATYRVQGTFGWDEIPDEVDIACVELMKDYFSKDKVWRNKYMKSIQTFDWQFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI
Ga0214921_100180333F056615N/AMYDLVDSVMPMFMDVYRQFDLQDPNTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIMSNKYINDQILQVRTSEKINLREKLTNIRDSEGNVIWEEINFPSNTPTVFELMGTTPMTDPLGGVVGYNSTVKRSENQTIGQ
Ga0214921_100180335F000258GGAGGMTVDYKADMMLDLRKFLWSQLILNKIFTATDYYSDNIGQEIIPIIPVQQAPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFIADISPTSPSEELQGFLSADVVLEVKYARFLDSVGRFL
Ga0214921_100180337F006841AGGAGGLATTIYSVEEIKLQNGSTVQLKPLSIKELRKFMAVIQKTASATDQAESLDVLIEACGVALEKQLPDLVKDKDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN
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