NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10018984

Scaffold Ga0214921_10018984


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10018984 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7482
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F011077Metagenome / Metatranscriptome295Y
F020851Metagenome / Metatranscriptome221Y
F037701Metagenome / Metatranscriptome167Y
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001898413F020851N/AMSRDIVDLAISMTEIDTGMHLSLEDREVMIEKILNKLENINQ
Ga0214921_1001898414F037701GGAGMIKSKEWRVSNRVWVNVGFNPRRIALGFSVDRFNFNIDFLWFWVTLEY
Ga0214921_1001898415F011077N/AMMADNLTWAEEDVNLWKGWTYSLEKNRYYFNDIGNESLAAFWADEFLNQAYVN
Ga0214921_1001898416F098668N/AMKNIPNLIAASGCFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKAIEKELTK
Ga0214921_100189845F004475GAGGMTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWRSKGLLKSRRTQKAFEASAAIARGQNEEI
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