NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10019090

Scaffold Ga0214921_10019090


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10019090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7449
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015732Metagenome / Metatranscriptome252N
F020690Metagenome / Metatranscriptome222N
F046380Metagenome / Metatranscriptome151N
F048314Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001909011F048314AGGMKATIEKAAEMLDLGYTEHEVVRILHVPPSMAEELIQKAEQWNDITYVPYTEKEVDDMAGYYGEE
Ga0214921_1001909013F015732AGGAMTKVTNLETAVSIVRNTPDKAIALSEIMNILGVSRSNAFVYHTKASKILFSANNVDEIMGKVSPKYKKVTESVQGTSATKKAAKLAEIDQFLANAPTAKGNPFAALGA
Ga0214921_1001909015F046380GGAGMNWKTLDQSYETMTQAEALDIVQQEAVSMGMGLLETMTWMSDNYDELDSVQRNAFRTAFRGFQRLLAPAV
Ga0214921_100190907F020690N/AMVSKGIYMSASAIYTHTKTAKVIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVEGKLAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP
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