NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10020674

Scaffold Ga0214921_10020674


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10020674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7036
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F007468Metagenome / Metatranscriptome350Y
F013414Metagenome / Metatranscriptome271Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002067410F000263GAGGMNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEQLAWAVAVEKETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGEKEGQKV
Ga0214921_1002067411F007468N/AMIFFKGFGQRDILIMLTKSSRFIEYMKLHLISLNQDFEDDYNVQSKINIQGQIIATEHLLSVATDIMNNNERIYV
Ga0214921_1002067412F021288GAGGMLGYTQKDLADMTYGVWQADLLVNADENPAIHNYLMTTHDFLQGLWAEGYFDHAN
Ga0214921_1002067415F001125AGGCGGMGDRANFGFKQSNDTTIFLYGHWAGHGMLERLANAVETARPRWTDESYATRICVSQIVGEDWKSETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLSM
Ga0214921_1002067417F001043GAGMFQTTNQQGIQGDNVSDYKDGFDDGYKFAREEMMEKLSEIDINDIDSWILDRLCEMIEGGKL
Ga0214921_100206746F013414AGGCGGMSKTREIKVAEDLVNLTEDHWFNAAILARYLTDQPFYTVDRIMELVAQIIRWQANRYNDELTTDTGIYNSGLTSEGLFLANELNETLNRLIKTYKWENIKLPIDPDKIIRRLPKAAEQSYRYSWLHEEKKDPILVNHPFI
Ga0214921_100206747F000852AGGAMQTKREYLKQQGITVGVRGRFSGAAKVAIQEALSKGVTFSDPQPVTKKAK
Ga0214921_100206749F001019AGGMTYEPSLEIVEVEYSCSPGGVDLFEVYDKSDIPLDMPIYETENLTEAVQFCYNLGKDFTVRTLAEWNERELAYVN
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