NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10021916

Scaffold Ga0214921_10021916


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10021916 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6753
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F005741Metagenome / Metatranscriptome391Y
F006984Metagenome / Metatranscriptome360Y
F017134Metagenome / Metatranscriptome242Y
F020168Metagenome / Metatranscriptome225Y
F074872Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002191612F000980N/AMTTWNKYTHVCHTCDALIEYTSTRDVIDITCECGGNTAYLSVADATIAPSNQTKEEKMESPSTEITTSTVPDTYNANLLVTYKVIRGYSDAEYTTDKVASLEWDLHNGRQSQKKVSLLQDKINKVKDIITEAYEDSEDKDTLRAIAEALDIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0214921_1002191614F001043GGAGMSDYRDGFDDGYKFAREEMIEKLAEIDITDIDSWILDRLAEMIEGNQL
Ga0214921_1002191616F001125AGGCGGMGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNQLSDNEHKVPIINWAAKTFTLMEEDLTTEVFSTSLESFVNKYSQLEEPVMV
Ga0214921_1002191617F006984AGGAMPNWVYNTLTIQGPKDEIDMIKDRLNAPFTLAQETFGMGDISLSGFPTKITQVTYSNPVF
Ga0214921_100219162F017134N/AMSVRSVIILSTTNERPLMDNFTVACLNYEICGATTTFFDEAEYEIYGDDYMCAECYDSEEMEFYETTGWADADALASAGHGMDEDY
Ga0214921_100219164F020168GAGMTDVIGSLIGIVLIFFLCSPIVLAVYMLSSSKVDIDGDGIDDVPNRWDNT
Ga0214921_100219167F074872AGGGGGMSAPYGKILPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNSSGSVRVLLEMPTKETRWTTVSNASLV
Ga0214921_100219169F005741AGGMKNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEETVNRYNVNTNQNTAQQLGLA
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