NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10023375

Scaffold Ga0214921_10023375


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10023375 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6437
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F026210Metagenome / Metatranscriptome198Y
F048101Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002337511F048101AGCAGMSKKNFKNIKDFLETCSEDEREYIYDLYNNASVSDLIDLLFEHLPADNTIKEIEEYREEMEWDDAEAERLNNEKV
Ga0214921_1002337518F016774GAGGMPPKKQKIEFLTDHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLEHNKKFKEKPKKSV
Ga0214921_100233754F011914N/AMITNNQIRALSEDELTYLYYCLNTEWNSLNMGYEFDYYIMKAFKNNTIHKLLDKYSDNLTDENKGLIMQILNKLEANI
Ga0214921_100233757F026210AGGAGMTHSINANPLDYDAKYPQVAESTNDDAKIFVMERNEGKEVMFQIEDGTQYYGSISSVPNSEHYYVIVKHNGLDWGWYVREEAIHFVEDTSTRI

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