NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10028177

Scaffold Ga0214921_10028177


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10028177 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5620
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F035307Metagenome172Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y
F060898Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100281772F060898AGAAGMPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDEGTQGKTFDDIQRQAMGIKASGDDIVSLQGSFAAQAGFGIGAGLGYTEE
Ga0214921_100281775F000258GGAGGMTVDYKADIMLDLRKYLWSQLKANNMFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDISEINEIRNLMTDLFRRMDDSARDANSYSGISKKFKFFSIFVADISPTSPSEEMAGFLSADVILEVKYARFLDANGRFA
Ga0214921_100281776F035307GGALDNSSLLVTAASGLQKGMAGTKGTILKDSSVAQISAAIYYHAQVVSKLTTNKAFEKKFQSVIFKQIQDDFGLYVDSQARVNPKSLHHVYEWNKTGNKNSRLFKLNILSTDGLAFKVGSEFLPSKSAVPNKFAKRRHVFINKASVMEAGMPLVIRPKSAERLVFETSTGVVYMPKGASVTVTKPGGGKATGRFRIAYAQFFTGNLVNSAIKKSGFQQLFNSSLTKAMRVPADVRKVKYSFNPNTLNMQAESAIASAFGGAS
Ga0214921_100281777F056615N/AMYDLVDSVMPMFLDIYRQFDLQDPNTGAIKKEWQFERTVPCSAKGIISNSSTGRVGDKQVMSNKYSNDQVLQIRTSDKITLREKITNIRDAEGVVIWEELNFPTNTPTVFELLGITPMTDPFGGVIGYNSTVKRSENQIIGQ
Ga0214921_100281778F058150N/ADSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYFVYIPVSYTNRQRQLRLNWSYTVGSVSTEKSHKIYVQTPYTDLSQAIDSLGLGSDYSDPNSKSYNELCNAERYARKLIEAYTGQQFYLYDDVQVVYGSGSDVLPLPYKIAQLHELYQNDILLVDTLSNINNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPSINDNYGGTFAVGSTYRVQGKFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI
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