NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10029154

Scaffold Ga0214921_10029154


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10029154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5478
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F010247Metagenome / Metatranscriptome306Y
F013082Metagenome274Y
F024771Metagenome204N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100291541F024771GAGMNDKKYIENFNHESYENRTKNYLNISEDRFVQYCVNRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEGGKTLTKIKVRDIKRYIYFEQSFTNYHTKFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDNIEYFEVQLN
Ga0214921_1002915418F006893AGGAMANLTIENISEITKKVLCNPKLYKELNFFEVPHNKICLAVIREITKLSYNEIGKAYKKSWFTIYSAVKDTNKNGLKT
Ga0214921_100291545F010247AGGAGMNVQGVIKYVYDNRLGKDGQANKFPNFKFKVGDHEVVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPSDANTEAKPDTSFNPEELEKELVQVAKDFDADLTVETKKQINKDEYMFVMALAKSAIESGKINVTKEEIDLLIKDLKFLFQINFHN
Ga0214921_100291548F013082AGGAMSLTKTVQQEIDRLYLASKLNSHIVANEAPYYYDLCSVEDKTITLDKFYELFPYHNPDINSEYWKQQHNRWKEIWKQDVV
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