NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10029586

Scaffold Ga0214921_10029586


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10029586 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5418
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F010897Metagenome / Metatranscriptome297Y
F020860Metagenome / Metatranscriptome221N
F025679Metagenome / Metatranscriptome200Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002958610F010897N/AMKLINSTFLCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPKYGKYIRPYNTGGRKGYLNVETYSWEEGLIELIAHELRHLYQWKKGKFFHGIKKIRKYNMGTRAKLSEVDASLYAKRKVREYRKGNFKLNLV
Ga0214921_1002958615F025679AGGAGMTKTFKIGEYAVGGTIRVSIPKTLTTIKIDIIDSNFKTKKLINQYIYYSFDRIRMERDLFQITSGYWSDKILGYISKTMNQSGEWIGNYCKI
Ga0214921_100295864F035200GGAGGMNVKYIVLRDGIRVSYDMHNSQAEAEVEANHWREIIKRWPDGTKVVVKKIGE
Ga0214921_100295865F010746AGTAGMTYKCSVSGEAISPERVEALKVLGVPESKWTNIKHSQVKKLRAVYAGDDGSNDIVICDAVDGGSLFDNEVVMEVENEC
Ga0214921_100295867F020860N/AMDKITKIKKLAEGGYAIYAVDPKTKSELQVGYIGDKLDIKGWLPEGVKIENS
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Institute for Fundamental Biomedical Research
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