NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10052024

Scaffold Ga0214921_10052024


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10052024 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3584
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F039497Metagenome / Metatranscriptome163N
F062447Metagenome / Metatranscriptome130N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1005202410F032536GGAMSQKQTLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTFQKLIRGFSDSDCWNLPQSTAKFLLPRIKHLRQNYHSLANRHHLIIDDKVVPYLGQENNFEFNETLGSYTDKTTGLGISLDEKEYEYVLDEIIFAFQMIVDEETSEVGLEELYEVYPKGFDPIKDRQMFLQKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFRDLWD
Ga0214921_100520242F039497GAGMSEEDNFHCHAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNVNTEGDEDEI
Ga0214921_100520246F104483GGAGMNKKIIDKIDLVIEDINYIQELIDFDTSDSSEYDLDSVVNLLAEIRGRVSNQEEEVEKIDLKQL
Ga0214921_100520248F024040N/AMNIYVSGHNWLAKVDLEDSIKKSDRYTEATTRAIESVLDDEERQGVNLKIIDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEQGL
Ga0214921_100520249F062447AGGAGMKHKIFWEKNSRVKGIVPAEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWGGTNYTFAETKLMVTFDKDNEGYSFNGGLKSYSLQDLKEVLDSVREILNKV
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