NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10058031

Scaffold Ga0214921_10058031


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10058031 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3308
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002935Metagenome519Y
F034472Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100580313F002935AGGMSSRTKGYIGTLVDGKKLATIANGIYNLQYSSDFSECTVDNLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDISDYIRVFGSRLDSNCSLWQSKMSVVPATISL
Ga0214921_100580314F000980N/AMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTDCTLLSVEDATIPYTDSPLPTEEEKMETTETSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQNSKHNAVLQGKIDAVKEIICEAYADSGDQDTLREIAEALSIELIKEVEFTASIEVTGTYSYNILENDYELDLESEVTDALYADSNNGNIEIGDTEVCNVREC
Ga0214921_100580315F000311GAGMYFELTAPDRLSMEMAYWDAQVMGLDPQALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR
Ga0214921_100580316F001043GGAGMSDYKDGFDDGYKFAREELMEKLSEIDIMDIDSWILDRLSEMIEGGTL
Ga0214921_100580318F001125GGCGGMGDRANFGFRDRKGDTVYLYGHWAGHGMLENLANAVNTARPRWTDESYATRICISQLIAEDWNQALSWGITVNELADNEHKIPVIDWSKQTFTLLEEDLQTVVFSTDLTSFVNKYSSQPAMV
Ga0214921_100580319F034472AGGAMPNWVYNTLTIQGPKDEIDMIKDRLNRPFTLAQETF
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